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I use the Weatherbug, mostly for sh!ts and giggles. It does give timely notifications of NWS watches and warnings however..
That page is a bit over reative, IMHO. I've been running Weatherbug for years with no real problem. I just ran SpyBot and it found nothing related to Weatherbug. Sure, you have to take care in installing just the bare bones version, and it is indeed ad-supported (so is this site, BTW) but I'm okay with that.
I personally think people can go a bit overboard worrying about adware/spyware, etc. Run Spybot or Ad Aware from time to time, keep your virus protection up to date with current virus definitions, browse only reputable Web sites, and don't worry about it...